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Update compbio leaderboard to assignment 4

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stijndcl 2022-03-31 20:12:18 +02:00
parent b156f90ea0
commit 0151913e61
3 changed files with 10 additions and 14 deletions
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18
data/menus/leaderboards.py
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@ -123,16 +123,17 @@ class BitcoinLeaderboard(Leaderboard):
@dataclass
class CompbioLeaderboard(Leaderboard):
colour: discord.Colour = field(default=discord.Colour.green())
title: str = field(default="Leaderboard Computationele Biologie #2")
title: str = field(default="Leaderboard Computationele Biologie #4")
reverse: bool = False
kmer: int = 600
size: int = 10000
amount: int = 10
def __post_init__(self):
self.title += f" (k = {self.kmer})"
self.title += f" ({self.size}-{self.amount})"
super().__post_init__()
def get_submission_user(self, submission_id: str) -> str:
with open("files/compbio_benchmarks_2.json", "r") as fp:
with open("files/compbio_benchmarks_4.json", "r") as fp:
file = json.load(fp)
if submission_id in file:
@ -142,14 +143,7 @@ class CompbioLeaderboard(Leaderboard):
return f"[# {submission_id}]"
def get_data(self) -> list[tuple]:
files = {
6: "J02459.1",
10: "J02459.1",
50: "J02459.1",
600: "AF033819.3"
}
url = f"https://github.ugent.be/raw/computationele-biologie/benchmarks-2022/main/reconstruction/{files[self.kmer]}.{self.kmer}mers.md"
url = f"https://github.ugent.be/raw/computationele-biologie/benchmarks-2022/tree/main/profile_hmm/size{self.size}-amount{self.amount}.md"
headers = {"Authorization": f"token {settings.UGENT_GH_TOKEN}"}
result = requests.get(url, headers=headers).text