Chewing_Bever/didier
0
0
Fork 0
mirror of https://github.com/stijndcl/didier.git synced 2026-04-07 15:48:29 +02:00
Code Issues Projects Releases Wiki Activity

Add optional benchmark to compbio lb

Browse source
This commit is contained in:
stijndcl 2022-03-12 21:03:01 +01:00
parent 3f2f9cd8f3
commit 0f973efe29
2 changed files with 18 additions and 3 deletions
Download patch file Download diff file Expand all files Collapse all files

16
data/menus/leaderboards.py
View file

@ -125,6 +125,11 @@ class CompbioLeaderboard(Leaderboard):
colour: discord.Colour = field(default=discord.Colour.green())
title: str = field(default="Leaderboard Computationele Biologie #2")
reverse: bool = False
kmer: int = 600
def __post_init__(self):
self.title += f" (k = {self.kmer})"
super().__post_init__()
def get_submission_user(self, submission_id: str) -> str:
with open("files/compbio_benchmarks_2.json", "r") as fp:
@ -137,8 +142,17 @@ class CompbioLeaderboard(Leaderboard):
return f"[# {submission_id}]"
def get_data(self) -> list[tuple]:
files = {
6: "J02459.1",
10: "J02459.1",
50: "J02459.1",
600: "AF033819.3"
}
url = f"https://github.ugent.be/raw/computationele-biologie/benchmarks-2022/main/reconstruction/{files[self.kmer]}.{self.kmer}mers.md"
headers = {"Authorization": f"token {settings.UGENT_GH_TOKEN}"}
result = requests.get(f"https://github.ugent.be/raw/computationele-biologie/benchmarks-2022/main/reconstruction/J02459.1.50mers.md", headers=headers).text
result = requests.get(url, headers=headers).text
# Remove table headers
result = result.split("\n")[2:]
data = []