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Add optional benchmark to compbio lb

pull/136/head
stijndcl 2022-03-12 21:03:01 +01:00
parent 3f2f9cd8f3
commit 0f973efe29
2 changed files with 18 additions and 3 deletions
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5
cogs/slash/school_slash.py
View File

@ -90,9 +90,10 @@ class SchoolSlash(commands.Cog):
_compbio_group = SlashCommandGroup("compbio", "Commands voor compbio opdrachten") _compbio_group = SlashCommandGroup("compbio", "Commands voor compbio opdrachten")
@_compbio_group.command(name="leaderboard", description="Gesorteerd en ingevuld leaderboard") @_compbio_group.command(name="leaderboard", description="Gesorteerd en ingevuld leaderboard")
async def _compbio_lb_slash(self, ctx: ApplicationContext): async def _compbio_lb_slash(self, ctx: ApplicationContext,
benchmark: Option(int, "De specifieke benchmark om op te halen (default k=600)", choices=[6, 10, 50, 600], default=600)):
await ctx.response.defer() await ctx.response.defer()
lb = leaderboards.CompbioLeaderboard(ctx) lb = leaderboards.CompbioLeaderboard(ctx, kmer=benchmark)
await lb.respond() await lb.respond()
@_compbio_group.command(name="submit", description="Link een Dodona-submission aan jouw username") @_compbio_group.command(name="submit", description="Link een Dodona-submission aan jouw username")

16
data/menus/leaderboards.py
View File

@ -125,6 +125,11 @@ class CompbioLeaderboard(Leaderboard):
colour: discord.Colour = field(default=discord.Colour.green()) colour: discord.Colour = field(default=discord.Colour.green())
title: str = field(default="Leaderboard Computationele Biologie #2") title: str = field(default="Leaderboard Computationele Biologie #2")
reverse: bool = False reverse: bool = False
kmer: int = 600
def __post_init__(self):
self.title += f" (k = {self.kmer})"
super().__post_init__()
def get_submission_user(self, submission_id: str) -> str: def get_submission_user(self, submission_id: str) -> str:
with open("files/compbio_benchmarks_2.json", "r") as fp: with open("files/compbio_benchmarks_2.json", "r") as fp:
@ -137,8 +142,17 @@ class CompbioLeaderboard(Leaderboard):
return f"[# {submission_id}]" return f"[# {submission_id}]"
def get_data(self) -> list[tuple]: def get_data(self) -> list[tuple]:
files = {
6: "J02459.1",
10: "J02459.1",
50: "J02459.1",
600: "AF033819.3"
}
url = f"https://github.ugent.be/raw/computationele-biologie/benchmarks-2022/main/reconstruction/{files[self.kmer]}.{self.kmer}mers.md"
headers = {"Authorization": f"token {settings.UGENT_GH_TOKEN}"} headers = {"Authorization": f"token {settings.UGENT_GH_TOKEN}"}
result = requests.get(f"https://github.ugent.be/raw/computationele-biologie/benchmarks-2022/main/reconstruction/J02459.1.50mers.md", headers=headers).text result = requests.get(url, headers=headers).text
# Remove table headers # Remove table headers
result = result.split("\n")[2:] result = result.split("\n")[2:]
data = [] data = []